PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006343-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 403aa    MW: 43994.6 Da    PI: 6.7982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006343-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.3e-053123501255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  NNU_006343-RA 312 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 350
                    7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-5310354No hitNo description
SuperFamilySSF474598.24E-10310354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-8314354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MESANLHHQH QLQEQLVGST SLATPSFYGV GSDHSWNSNL ILNDGSFNQN VSGVFSNSRD  60
LRQNNDILIS PPLNSSMIQD MGFHWTGNAG SFTNNSANQL HLAKIKEELS DSFPKFSETV  120
TNLDEFHLPS TSYVKNEQQQ QHLHDLSEKI LLRTLSSGRI NALQHSEEEL YSDAQSCASL  180
GGIPTSSAAS FSRIFPTTNI SNKNSSSSPF SSSFGMNLQA LDLLTSTRYT GSFSQPSHGN  240
LGMLRDSLSF GLDQLQQSSH KSPYSPNKVS SFSNGVTDTK RQSSLADAKL SQAATKKPRF  300
ESRSSFPPFK VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYIKFLQ DQVEGSGDGE  360
RNEEPKRDLR SRGLCLVPLS CTSYVTNDGS GVWPPPPNFG GGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254734.10.0PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBLE0CQH41e-163E0CQH4_VITVI; Putative uncharacterized protein
TrEMBLA5C1E11e-161A5C1E1_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g12970.t011e-162(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-61bHLH family protein